Phytopathogenic oomycetes: a review focusing on Phytophthora cinnamomi and biotechnological approaches.
Identifieur interne : 000091 ( Main/Exploration ); précédent : 000090; suivant : 000092Phytopathogenic oomycetes: a review focusing on Phytophthora cinnamomi and biotechnological approaches.
Auteurs : Darling De Andrade Lourenço [Brésil, Portugal] ; Iuliia Branco [Brésil, Portugal] ; Altino Choupina [Portugal]Source :
- Molecular biology reports [ 1573-4978 ] ; 2020.
Abstract
The Phytophthora genus is composed, mainly, of plant pathogens. This genus belongs to the Oomycete class, also known as "pseudo-fungi", within the Chromista Kingdom. Phytophthora spp. is highlighted due to the significant plant diseases that they cause, which represents some of the most economically and cultural losses, such as European chestnut ink disease, which is caused by P. cinnamomi. Currently, there have been four genome assemblies placed at the National Center for Biotechnology Information (NCBI), although the progress to understand and elucidate the pathogenic process of P. cinnamomi by its genome is progressing slowly. In this review paper, we aim to report and discuss the recent findings related to P. cinnamomi and its genomic information. Our research is based on paper databases that reported probable functions to P. cinnamomi proteins using sequence alignments, bioinformatics, and biotechnology approaches. Some of these proteins studied have functions that are proposed to be involved in the asexual sporulation and zoosporogenesis leading to the host colonization and consequently associated with pathogenicity. Some remarkable genes and proteins discussed here are related to oospore development, inhibition of sporangium formation and cleavage, inhibition of flagellar assembly, blockage of cyst germination and hyphal extension, and biofilm proteins. Lastly, we report some biotechnological approaches using biological control, studies with genome sequencing of P. cinnamomi resistant plants, and gene silencing through RNA interference (iRNA).
DOI: 10.1007/s11033-020-05911-8
PubMed: 33068230
Affiliations:
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level="j">Molecular biology reports</title><idno type="eISSN">1573-4978</idno><imprint><date when="2020" type="published">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The Phytophthora genus is composed, mainly, of plant pathogens. This genus belongs to the Oomycete class, also known as "pseudo-fungi", within the Chromista Kingdom. Phytophthora spp. is highlighted due to the significant plant diseases that they cause, which represents some of the most economically and cultural losses, such as European chestnut ink disease, which is caused by P. cinnamomi. Currently, there have been four genome assemblies placed at the National Center for Biotechnology Information (NCBI), although the progress to understand and elucidate the pathogenic process of P. cinnamomi by its genome is progressing slowly. In this review paper, we aim to report and discuss the recent findings related to P. cinnamomi and its genomic information. Our research is based on paper databases that reported probable functions to P. cinnamomi proteins using sequence alignments, bioinformatics, and biotechnology approaches. Some of these proteins studied have functions that are proposed to be involved in the asexual sporulation and zoosporogenesis leading to the host colonization and consequently associated with pathogenicity. Some remarkable genes and proteins discussed here are related to oospore development, inhibition of sporangium formation and cleavage, inhibition of flagellar assembly, blockage of cyst germination and hyphal extension, and biofilm proteins. Lastly, we report some biotechnological approaches using biological control, studies with genome sequencing of P. cinnamomi resistant plants, and gene silencing through RNA interference (iRNA).</div></front></TEI><pubmed><MedlineCitation Status="In-Process" Owner="NLM"><PMID Version="1">33068230</PMID><DateRevised><Year>2020</Year><Month>11</Month><Day>19</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1573-4978</ISSN><JournalIssue CitedMedium="Internet"><Volume>47</Volume><Issue>11</Issue><PubDate><Year>2020</Year><Month>Nov</Month></PubDate></JournalIssue><Title>Molecular biology reports</Title><ISOAbbreviation>Mol Biol Rep</ISOAbbreviation></Journal><ArticleTitle>Phytopathogenic oomycetes: a review focusing on Phytophthora cinnamomi and biotechnological approaches.</ArticleTitle><Pagination><MedlinePgn>9179-9188</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1007/s11033-020-05911-8</ELocationID><Abstract><AbstractText>The Phytophthora genus is composed, mainly, of plant pathogens. This genus belongs to the Oomycete class, also known as "pseudo-fungi", within the Chromista Kingdom. Phytophthora spp. is highlighted due to the significant plant diseases that they cause, which represents some of the most economically and cultural losses, such as European chestnut ink disease, which is caused by P. cinnamomi. Currently, there have been four genome assemblies placed at the National Center for Biotechnology Information (NCBI), although the progress to understand and elucidate the pathogenic process of P. cinnamomi by its genome is progressing slowly. In this review paper, we aim to report and discuss the recent findings related to P. cinnamomi and its genomic information. Our research is based on paper databases that reported probable functions to P. cinnamomi proteins using sequence alignments, bioinformatics, and biotechnology approaches. Some of these proteins studied have functions that are proposed to be involved in the asexual sporulation and zoosporogenesis leading to the host colonization and consequently associated with pathogenicity. Some remarkable genes and proteins discussed here are related to oospore development, inhibition of sporangium formation and cleavage, inhibition of flagellar assembly, blockage of cyst germination and hyphal extension, and biofilm proteins. Lastly, we report some biotechnological approaches using biological control, studies with genome sequencing of P. cinnamomi resistant plants, and gene silencing through RNA interference (iRNA).</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>de Andrade Lourenço</LastName><ForeName>Darling</ForeName><Initials>D</Initials><AffiliationInfo><Affiliation>Department of Biochemistry, Institute of Basic Health Sciences, Federal University of Rio Grande do Sul, Ramiro Barcelos street, 2600, RS, 90035-003, Porto Alegre, Brazil.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>CIMO-Mountain Research Center, Department of Biology and Biotechnology, Agricultural College of Bragança, Polytechnic Institute of Bragança, Campus Santa Apolónia, 5301-855, Bragança, Portugal.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Branco</LastName><ForeName>Iuliia</ForeName><Initials>I</Initials><AffiliationInfo><Affiliation>Department of Biochemistry, Institute of Basic Health Sciences, Federal University of Rio Grande do Sul, Ramiro Barcelos street, 2600, RS, 90035-003, Porto Alegre, Brazil.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>CIMO-Mountain Research Center, Department of Biology and Biotechnology, Agricultural College of Bragança, Polytechnic Institute of Bragança, Campus Santa Apolónia, 5301-855, Bragança, Portugal.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Choupina</LastName><ForeName>Altino</ForeName><Initials>A</Initials><Identifier Source="ORCID">http://orcid.org/0000-0002-3956-9398</Identifier><AffiliationInfo><Affiliation>CIMO-Mountain Research Center, Department of Biology and Biotechnology, Agricultural College of Bragança, Polytechnic Institute of Bragança, Campus Santa Apolónia, 5301-855, Bragança, Portugal. albracho@ipb.pt.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Polytechnic Institute of Bragança, Campus Santa Apolónia, 5301-855, Bragança, Portugal. albracho@ipb.pt.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D016454">Review</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2020</Year><Month>10</Month><Day>17</Day></ArticleDate></Article><MedlineJournalInfo><Country>Netherlands</Country><MedlineTA>Mol Biol Rep</MedlineTA><NlmUniqueID>0403234</NlmUniqueID><ISSNLinking>0301-4851</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Biological control</Keyword><Keyword MajorTopicYN="N">Chestnut ink disease</Keyword><Keyword MajorTopicYN="N">Oomycetes</Keyword><Keyword MajorTopicYN="N">RNA interference</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2020</Year><Month>07</Month><Day>20</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2020</Year><Month>10</Month><Day>10</Day></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2020</Year><Month>10</Month><Day>18</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2020</Year><Month>10</Month><Day>18</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2020</Year><Month>10</Month><Day>17</Day><Hour>12</Hour><Minute>5</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">33068230</ArticleId><ArticleId IdType="doi">10.1007/s11033-020-05911-8</ArticleId><ArticleId IdType="pii">10.1007/s11033-020-05911-8</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>Brésil</li><li>Portugal</li></country><region><li>Rio Grande do Sul</li></region><settlement><li>Porto Alegre</li></settlement><orgName><li>Université fédérale du Rio Grande do Sul</li></orgName></list><tree><country name="Brésil"><region name="Rio Grande do Sul"><name sortKey="De Andrade Lourenco, Darling" sort="De Andrade Lourenco, Darling" uniqKey="De Andrade Lourenco D" first="Darling" last="De Andrade Lourenço">Darling De Andrade Lourenço</name></region><name sortKey="Branco, Iuliia" sort="Branco, Iuliia" uniqKey="Branco I" first="Iuliia" last="Branco">Iuliia Branco</name></country><country name="Portugal"><noRegion><name sortKey="De Andrade Lourenco, Darling" sort="De Andrade Lourenco, Darling" uniqKey="De Andrade Lourenco D" first="Darling" last="De Andrade Lourenço">Darling De Andrade Lourenço</name></noRegion><name sortKey="Branco, Iuliia" sort="Branco, Iuliia" uniqKey="Branco I" first="Iuliia" last="Branco">Iuliia Branco</name><name sortKey="Choupina, Altino" sort="Choupina, Altino" uniqKey="Choupina A" first="Altino" last="Choupina">Altino Choupina</name><name sortKey="Choupina, Altino" sort="Choupina, Altino" uniqKey="Choupina A" first="Altino" 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